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The Bumbling Biochemist

The Bumbling Biochemist

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Author: Brianna Bibel

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Ribosome-focused methods: ribosome profiling/footprinting/Ribo-Seq; polysome profiling; toeprinting

September 21, 2024September 22, 2024

The biochemical equivalent of Disneyland trying to figure out how popular a ride is is scientists trying to figure out […]

My postdoc work!

August 23, 2024May 11, 2026

My postdoc work – It’s here!!!!!  PS – we originally posted it as a pre-print (paper that hasn’t yet been […]

Want to be a scientist? Start making (and keeping up to date) a CV (Curriculum Vitae) early! 

August 13, 2024March 30, 2026

That’s a lot to cram in, so you want to keep out unnecessary “filler” words and full sentences (e.g., “I […]

Tips for giving a research presentation (especially to a more general audience)

August 2, 2024September 14, 2025

When you give a research presentation* (especially to a more general audience), you’re telling a story. And you’re the director […]

Predicting protein protonation states with H++

July 28, 2024July 28, 2024

We’ve noticed some pH-dependent changes in our protein, so a free web-based tool that I’ve been exploring is H++. It […]

Differential Scanning Fluorimetry (DSF), aka Fluorescence Thermal Shift (FTS), aka Fast Thermal Melt

July 27, 2024January 26, 2026

Fluorescence Thermal Shift (FTS), aka Differential Scanning Fluorimetry (DSF) aka Fast Thermal Melt, is a way to measure the thermal […]

Skills for aspiring scientists (such as people wanting to go to grad school) to develop early on

June 16, 2024June 16, 2024

So you think you want to be a scientist? Maybe you’re an undergrad or postbac hoping to go to grad […]

Autoinduction for recombinant protein overexpression

June 7, 2024January 21, 2026

Auto-induction is an alternative to IPTG-based induction for genes under regulation by a lac promoter. The media involves a mix […]

Notes on RT-qPCR vs RNA-seq

May 21, 2024May 21, 2024

RT-qPCR (reverse transcription quantitative PCR) lets you measure “gene expression” at the level of mRNA. Basically, you can see how […]

One-year teaching update

May 17, 2024May 17, 2024

I can’t believe it’s (almost) been a full academic year as a visiting professor at St. Mary’s College of California! […]

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