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The Bumbling Biochemist

The Bumbling Biochemist

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Category: structural biology

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Crystal harvesting and CryoLoop preparation & recycling

July 15, 2021January 7, 2023

Going meta and retro made a video of a Twitter thread I made in 2018 and posted on my blog […]

Protein crystallization – Give your protein a nice cocktail!: precipitants, crystallization diagrams, screening and optimization

July 13, 2021September 30, 2026

I screen, you screen, we (probably not all) screen precipitants and pH in hopes protein crystals will be seen! Protein crystallography aims […]

Intro to protein crystallization (the actually getting crystals stuff and why it’s so hard)

July 12, 2021September 24, 2026

One time I shipped some protein crystals and on the shipping form it asks what’s contained in there and what […]

Using the PDB to investigate x-ray crystallography structures: resolution, R-factor, outliers & more

July 11, 2021September 20, 2026

A guide to interpreting, analyzing, and playing with structures in the Protein Data Bank (PDB), with an emphasis on x-ray […]

Where’s the protein?! Troubleshooting and optimizing recombinant protein expression

June 17, 2021June 11, 2026

Today I thought I’d go over some background and practical advice for things you can do if you ask a […]

Jane Richardson – crystallographer and ribbon diagram inventor

May 21, 2021September 1, 2024

Jane Richardson invented the ribbon representation for protein structures. You know what I’m talking about even if you have no […]

HDX-MS: Hydrogen Deuterium eXchange – Mass Spectroscopy

May 19, 2021February 1, 2026

One of the things I’ve been feeling down about lately is that I’ve been waiting for an HDX-MS dataset – […]

The PDB (Protein Data Bank)

May 14, 2021September 20, 2026

Happy 50th birthday to the PDB! 50 years since its founding, The Protein Data Bank continues to be, *the* place […]

Rosalind Franklin and Photo 51

March 9, 2021July 25, 2025

Rosalind Franklin – here’s a woman who definitely deserves to be celebrated during Women’s History Month (and year round!) You’ve […]

Flash freeze dance – cryoprotectants, vitrification, crystallization, etc.

February 17, 2021January 7, 2023

Flash freeze dance time! I love protein purification, but I always have this weight of worry that – no matter […]

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